PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00009695-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family AP2
Protein Properties Length: 472aa    MW: 52555.6 Da    PI: 6.4112
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00009695-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.55.9e-17152201155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  SMil_00009695-RA_Salv 152 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 201
                            78*******************......55************************997 PP

2AP2431.1e-13244294155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  SMil_00009695-RA_Salv 244 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVEAARAYDKAAIKCNG 294
                            89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-16152210IPR016177DNA-binding domain
PfamPF008475.4E-9152201IPR001471AP2/ERF domain
CDDcd000185.24E-11153208No hitNo description
PROSITE profilePS5103217.701153209IPR001471AP2/ERF domain
SMARTSM003801.9E-31153215IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-17153209IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-17244304IPR016177DNA-binding domain
PfamPF008473.0E-9244294IPR001471AP2/ERF domain
CDDcd000184.64E-25244304No hitNo description
SMARTSM003808.9E-32245308IPR001471AP2/ERF domain
PROSITE profilePS5103215.475245302IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-16245302IPR001471AP2/ERF domain
PRINTSPR003674.2E-6246257IPR001471AP2/ERF domain
PRINTSPR003674.2E-6284304IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MWDLNDSPDQ RRDDESEGCS DDKGKRVGSM SNSSSSAVVV EDGSDDDEAA AAARKRSSKI  60
FGFSVCEDDA DDDDADAGPC SSLVTRQFFP VDDSEAAADG GGSAAFPRAH WVGVKFCQSE  120
PHASAAAVFG KSAAEVAQPL KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG  180
GFDTAHAAAR AYDRAAIKFR GVEADINFSI EDYEDDLKQM SNLTKEEFVH VLRRQSTGFP  240
RGSSKYRGVT LHKCGRWEAR MGQFLGKKYV YLGLFDTEVE AARAYDKAAI KCNGKEAVTN  300
FDPSIYEDEL KSAESSNNAA DHNLDLSLGN SASQQQQHSL PQFEVEHCRN QALRPEKRDG  360
YNETETLQLL SQAHLHSPES FKMSNEAPRY AHHPMFNRPY NSQNYHQIHQ FSEGGRNVGG  420
EVSVSRNEQQ WQMNQAQMFA NAAASSGFPS AQTFRPQNWI QKNGIHPLMR PS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097248.10.0PREDICTED: floral homeotic protein APETALA 2-like isoform X1
SwissprotP479271e-148AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLF6H4H70.0F6H4H7_VITVI; Putative uncharacterized protein
STRINGVIT_07s0031g00220.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20192365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-123AP2 family protein